Fast and sensitive mapping of bisulfite-treated sequencing dataOTTO, Christian; STADLER, Peter F; HOFFMANN, Steve et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 13, pp 1698-1704, issn 1367-4803, 7 p.Article

maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequencesMENZEL, Peter; STADLER, Peter F; GORODKIN, Jan et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 3, pp 317-325, issn 1367-4803, 9 p.Article

Minimum path bases and relevant pathsGLEISS, Petra M; LEYDOLD, Josef; STADLER, Peter F et al.Networks (New York, NY). 2005, Vol 46, Num 3, pp 119-123, issn 0028-3045, 5 p.Article

FRANz: reconstruction of wild multi-generation pedigreesRIESTER, Markus; STADLER, Peter F; KLEMM, Konstantin et al.Bioinformatics (Oxford. Print). 2009, Vol 25, Num 16, pp 2134-2139, issn 1367-4803, 6 p.Article

Combinatorial landscapesREIDYS, Christian M; STADLER, Peter F.SIAM review (Print). 2002, Vol 44, Num 1, pp 3-54, issn 0036-1445Article

SnoReport : computational identification of snoRNAs with unknown targetsHERTEL, Jana; HOFACKER, Ivo L; STADLER, Peter F et al.Bioinformatics (Oxford. Print). 2008, Vol 24, Num 2, pp 158-164, issn 1367-4803, 7 p.Article

Evolving towards the hypercycle : A spatial model of molecular evolutionSTEPHAN-OTTO ATTOLINI, Camille; STADLER, Peter F.Physica. D. 2006, Vol 217, Num 2, pp 134-141, issn 0167-2789, 8 p.Article

Explicit collision simulation of chemical reactions in a graph based artificial chemistryBENKÖ, Gil; FLAMM, Christoph; STADLER, Peter F et al.Lecture notes in computer science. 2005, pp 725-733, issn 0302-9743, isbn 3-540-28848-1, 1Vol, 9 p.Conference Paper

Neutrality in fitness landscapesREIDYS, Christian M; STADLER, Peter F.Applied mathematics and computation. 2001, Vol 117, Num 2-3, pp 321-350, issn 0096-3003Article

Laplacian eigenvectors of graphs (Perron-Frobenius and Faber-Krahn type theorems)Biyikoğlu, Türker; Leydold, Josef; Stadler, Peter F et al.Lecture notes in mathematics. 2007, issn 0075-8434, isbn 978-3-540-73509-0, 1Vol, VIII, 115 p, isbn 978-3-540-73509-0Book

A note on fundamental, non-fundamental, and robust cycle basesKLEMM, Konstantin; STADLER, Peter F.Discrete applied mathematics. 2009, Vol 157, Num 10, pp 2432-2438, issn 0166-218X, 7 p.Conference Paper

CelloS : A multi-level approach to evolutionary dynamicsSTEPHAN-OTTO ATTOLINI, Camille; STADLER, Peter F; FLAMM, Christoph et al.Lecture notes in computer science. 2005, pp 500-509, issn 0302-9743, isbn 3-540-28848-1, 1Vol, 10 p.Conference Paper

_PLEXY: efficient target prediction for box C/D snoRNAsKEHR, Stephanie; BARTSCHAT, Sebastian; STADLER, Peter F et al.Bioinformatics (Oxford. Print). 2011, Vol 27, Num 2, pp 279-280, issn 1367-4803, 2 p.Article

Conserved RNA secondary structures in Flaviviridae genomesTHURNER, Caroline; WITWER, Christina; HOFACKER, Ivo L et al.Journal of general virology. 2004, Vol 85, pp 1113-1124, issn 0022-1317, 12 p., 5Article

Landscapes on spaces of treesBASTERT, Oliver; ROCKMORE, Dan; STADLER, Peter F et al.Applied mathematics and computation. 2002, Vol 131, Num 2-3, pp 439-459, issn 0096-3003Article

Local RNA base pairing probabilities in large sequencesBERNHART, Stephan H; HOFACKER, Ivo L; STADLER, Peter F et al.Bioinformatics (Oxford. Print). 2006, Vol 22, Num 5, pp 614-615, issn 1367-4803, 2 p.Article

Alignment of RNA base pairing probability matricesHOFACKER, Ivo L; BERNHART, Stephan H. F; STADLER, Peter F et al.Bioinformatics (Oxford. Print). 2004, Vol 20, Num 14, pp 2222-2227, issn 1367-4803, 6 p.Article

Evidence for human microRNA-offset RNAs in small RNA sequencing dataLANGENBERGER, David; BERMUDEZ-SANTANA, Clara; HERTEL, Jana et al.Bioinformatics (Oxford. Print). 2009, Vol 25, Num 18, pp 2298-2301, issn 1367-4803, 4 p.Article

Networks in Computational BiologyDRESS, Andreas; KARASÖSEN, Bülent; STADLER, Peter F et al.Discrete applied mathematics. 2009, Vol 157, Num 10, issn 0166-218X, 300 p.Conference Proceedings

A scale-free graph model based on bipartite graphsBIRMELE, Etienne.Discrete applied mathematics. 2009, Vol 157, Num 10, pp 2267-2284, issn 0166-218X, 18 p.Conference Paper

Split decomposition over an abelian group, Part 2: Group―valued split systems with weakly compatible supportDRESS, Andreas.Discrete applied mathematics. 2009, Vol 157, Num 10, pp 2349-2360, issn 0166-218X, 12 p.Conference Paper

Graph Laplacians, nodal domains, and hyperplane arrangementsBIYIKOGLU, Türker; HORDIJK, Wim; LEYDOLD, Josef et al.Linear algebra and its applications. 2004, Vol 390, pp 155-174, issn 0024-3795, 20 p.Article

deepBlockAlign: a tool for aligning RNA-seq profiles of read block patternsLANGENBERGER, David; PUNDHIR, Sachin; EKSTRØM, Claus T et al.Bioinformatics (Oxford. Print). 2012, Vol 28, Num 1, pp 17-24, issn 1367-4803, 8 p.Article

Diagonalized Cartesian products of S-prime graphs are S-primeHELLMUTH, Marc; OSTERMEIER, Lydia; STADLER, Peter F et al.Discrete mathematics. 2012, Vol 312, Num 1, pp 74-80, issn 0012-365X, 7 p.Article

An introduction to the perplex number systemCHANDLER, Jerry L. R.Discrete applied mathematics. 2009, Vol 157, Num 10, pp 2296-2309, issn 0166-218X, 14 p.Conference Paper